PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1065691g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family ARF
Protein Properties Length: 1129aa    MW: 125398 Da    PI: 6.8547
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1065691g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.42.3e-22128229199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  PDK_30s1065691g002 128 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI- 215
                         99*****************************954.4444.49************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l+++++r+
  PDK_30s1065691g002 216 -RDEKQQLLLGIRRA 229
                         .5688889****997 PP

2Auxin_resp116.91.8e-38254337183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras+seFvv+++k++ka++ +++s+GmRf+m fete+s +rr++Gt++g+sdldpvrW+nS+W +L+
  PDK_30s1065691g002 254 AAHAAANNSPFTVFYNPRASPSEFVVPFAKYQKAVYnNQISLGMRFRMLFETEESGTRRYMGTITGISDLDPVRWKNSQWCNLQ 337
                         79********************************98799*****************************************9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.11E-42122257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-40123243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-18127219No hitNo description
PfamPF023621.7E-20128229IPR003340B3 DNA binding domain
PROSITE profilePS5086311.716128230IPR003340B3 DNA binding domain
SMARTSM010193.7E-22128230IPR003340B3 DNA binding domain
PfamPF065071.2E-33254337IPR010525Auxin response factor
PfamPF023093.5E-99941081IPR033389AUX/IAA domain
PROSITE profilePS5174526.9849961080IPR000270PB1 domain
SuperFamilySSF542777.85E-710131075No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1129 aa     Download sequence    Send to blast
MKGTVSAAPA ANPCDGERKT INPELWYACA GPLVTLPPVG SLVVYFAQGH SEQVAASMQK  60
DIDAHIPNYP NLPSKLICLL HNVTLHADPE TDEVYAQMTL QPVSTYDKDA LQASELALKQ  120
TRMQTEFFCK TLTASDTSTH GGFSVPRRAA EKIFPPLDFS MQPPAQELQA RDLHDNVWTF  180
RHIYRGQPKR HLLTTGWSLF VSGKRLFAGD SVLFIRDEKQ QLLLGIRRAN RQPTNISSSV  240
LSSDSMHIGI LAAAAHAAAN NSPFTVFYNP RASPSEFVVP FAKYQKAVYN NQISLGMRFR  300
MLFETEESGT RRYMGTITGI SDLDPVRWKN SQWCNLQVGW DESAAGERRN RVSIWEIEPV  360
LAPFFICPPP FFRPKRPRQP GIPDDESSDM ENLFKRAMPW LSEEICRKDS QTQNTVMPGL  420
SLVQWMSMQQ NAPPANSNMQ TDYLRSLTAP AIQNAGATDL SRQLGMQAPF LQQNNIQFNA  480
ARLPQQNQQL DQFSKVSVPL NQLGVVTRPQ QQMQDVGTQQ RQQLVNQSLP LNQTQSNIIQ  540
PQVLVQAQVQ QQQPVIQSHQ PLQTSMQQNQ PQHQQLFLQQ QQQHQQQHQQ QHQQQLQQQH  600
QFQQQQNRMP VQLPNHINQQ LQLTDHQIQL QLLQKPQQQQ QTLSQPTAQH PELPQIQEQQ  660
KPHSEGPHQL ANSHSLTQQN MLSQQCAKTT SQAVRLSQPL PQQSQQKFHQ QQVVLSELNG  720
AVLPPTPKTN LLPTTGSSLL AAGGAQSGLT EDVPSCSTSP STNNGVVFPQ LILNRSHHPS  780
TMTTDKTSQS AVTILSHNSF EAAAATPNIA TELPKPINNV KASTPISKVQ TQGVIAPQTF  840
ISNAAQMDYL DTTSSGTSVC ISQTDGPLQQ SFPLSSLNQP SMFGDAPPDS EVQGTDPRNN  900
VLFGVNIDGP LGIPLTTDAL LANSINSGKY QNLISGNVIT NPSTSKDTQQ ELSSSMVSQS  960
FGVPNVAFNS IDSTVNEGSF LNRSSWAPAP PLQRMRTYTK VHKRGAVGRS IDIARYSGYD  1020
ELKHDLARMF SIEGQLEDRQ RIGWKLVYVD HESDVLLVGD DPWEEFVNCV RYIRILSPQE  1080
VQQMSLDGDL GNNILPNQAC SSSDGGNAWR GQCDRNSGNP SAGSYDHLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1681635845388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008798164.10.0PREDICTED: auxin response factor 19-like isoform X2
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLI1GWQ90.0I1GWQ9_BRADI; Auxin response factor
STRINGBRADI1G34340.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19